data visualization
+ art
History of the Human Genome Assembly
22 years, 3,117,275,501 bases and 0 gaps later
Round numbers are always false.
— Samuel Johnson
1 · History of the human genome assembly — year by year
These are based on the Scientific American Graphic Science illustration, which used 1,000,000 base regions. The mitochondrial chromosome is not shown because it is much smaller (16,569 bases) than a region.
how big are things on the image?
Imperial units
If the poster is printed at 24" × 24" then the scale is 0.24" per 10,000,000 bases and the total length of all chromosomes is 74" or 6.2'.
SI units
If the poster is printed at 50 cm × 50 cm, the scale is 0.49 cm per 10,000,000 bases and the total length of all chromosomes is 154.2 cm or 1.54 m.
1.1 · in 1,000,000 base regions
buy artwork
▲ THE HISTORY OF THE HUMAN GENOME ASSEMBLY — YEAR BY YEAR | Each chromosome is divided into 1,000,000 base regions, colored to indicate when the region reached 50, 90 or 99%+ completion. Completion from previous years is carried over in grey. Chromosomes 1–22, X and Y are shown. Mitochondrial chromosome is not shown.
(
BUY ARTWORK)
1.2 · in 250,000 base regions
buy artwork
▲ THE HISTORY OF THE HUMAN GENOME ASSEMBLY — YEAR BY YEAR | Each chromosome is divided into 250,000 base regions, colored to indicate when the region reached 50, 90 or 99%+ completion. Completion from previous years is carried over in grey. Chromosomes 1–22, X and Y are shown. Mitochondrial chromosome is not shown.
(
BUY ARTWORK)
1.3 · in 5,000,000 base regions
buy artwork
▲ THE HISTORY OF THE HUMAN GENOME ASSEMBLY — YEAR BY YEAR | Each chromosome is divided into 5,000,000 base regions, colored to indicate when the region reached 50, 90 or 99%+ completion. Completion from previous years is carried over in grey. Chromosomes 1–22, X and Y are shown. Mitochondrial chromosome is not shown.
(
BUY ARTWORK)
2 · History of the human genome assembly — when was it completed?
how big are things on the image?
Imperial units
If the poster is printed at 24" × 24" then the scale is 0.41" per 1,000,000 bases and the total length of all chromosomes is 1,272.4" or 106.0'.
SI units
If the poster is printed at 50 cm × 50 cm, the scale is 0.85 cm per 1,000,000 bases and the total length of all chromosomes is 2,650.7 cm or 26.51 m.
2.1 · in 50,000 base regions
buy artwork
▲ THE HISTORY OF THE HUMAN GENOME ASSEMBLY — WHEN WAS IT COMPLETED? | The human genome is shown chromosome by chromosome (1—22, X, Y), with color representing the assembly version in which each 50,000 base region reached 99%+ completion. The mitochondrial chromosome is not shown.
(
BUY ARTWORK)
2.2 · in 250,000 base regions
buy artwork
▲ THE HISTORY OF THE HUMAN GENOME ASSEMBLY — WHEN WAS IT COMPLETED? | The human genome is shown chromosome by chromosome (1—22, X, Y), with color representing the assembly version in which each 250,000 base region reached 99%+ completion. The mitochondrial chromosome is not shown.
(
BUY ARTWORK)
3 · Structure of the Dec 2013 hg38 human genome assembly
how big are things on the image?
Imperial units
If the poster is printed at 24" × 24" then the scale is 0.28" per 1,000,000 bases and the total length of all chromosomes is 859.1" or 71.6'.
SI units
If the poster is printed at 50 cm × 50 cm, the scale is 0.57 cm per 1,000,000 bases and the total length of all chromosomes is 1,789.8 cm or 17.90 m.
buy artwork
▲ FILLING IN THE GAPS | Before the March 2022 telomere-to-telomere assembly, the most recent humang enome assembly was from 2013 (hg38). This assembly had 1,001 gaps in chromosomes 1–22, X and Y. This panel shows the size, location and distribution of these gaps. To make small regions visible, those smaller than 230 kb are shown at a fixed size. The mitochondrial chromosome is included in the image and includes a single gap.
(
BUY ARTWORK)
buy artwork
▲ FILLING IN THE GAPS | Before the March 2022 telomere-to-telomere assembly, the most recent humang enome assembly was from 2013 (hg38). This assembly had 1,001 gaps in chromosomes 1–22, X and Y. This panel shows the size, location and distribution of these gaps. To make small regions visible, those smaller than 230 kb are shown at a fixed size. The mitochondrial chromosome is included in the image and includes a single gap.
(
BUY ARTWORK)
A grand challenge
·
The Earth BioGenome Project (EBP) is a moonshot for biology, aims to sequence, catalog and characterize the genomes of all of Earth’s eukaryotic biodiversity over a period of ten years. The articles in this special issue of PNAS explore aspects of the project including a review of progress, descriptions of major scientific goals, exemplar projects, examinations of ethical, legal, and social issues, and applications of biodiversity genomics.
4 · Chromosome spirals — sequence length in CHM13v2
These posters are based on a design I made for the 20th anniversary of Canada's Michael Smith Genome Sciences Center, but with chromosome lengths updated to the
CHM13v2 (Mar 2022) assembly.
how big are things on the image?
Imperial units
If the poster is printed at 24" × 24" then the scale is 0.46" per 1,000,000 bases and the total length of all spirals is 1,428.3" or 119.0'.
SI units
If the poster is printed at 50 cm × 50 cm, the scale is 0.95 cm per 1,000,000 bases and the total length of all spirals is 2,975.6 cm or 29.76 m.
buy artwork
▲ Human chromosomes 1–22, X, Y and M are shown as spirals, whose length corresponds to the number of bases (A, T, G, or C) in their sequence in the first gapless telomere-to-telomere assembly of the human genome (
CHM13v2, March 2022).
(
BUY ARTWORK)
buy artwork
▲ Human chromosomes 1–22, X, Y and M are shown as spirals, whose length corresponds to the number of bases (A, T, G, or C) in their sequence in the first gapless telomere-to-telomere assembly of the human genome (
CHM13v2, March 2022).
(
BUY ARTWORK)
news
+ thoughts
Wed 11-06-2025
Fuelled by philanthropy, findings into the workings of BRCA1 and BRCA2 genes have led to groundbreaking research and lifesaving innovations to care for families facing cancer.
This set of 100 one-of-a-kind prints explore the structure of these genes. Each artwork is unique — if you put them all together, you get the full sequence of the BRCA1 and BRCA2 proteins.
Mon 17-03-2025
The needs of the many outweigh the needs of the few. —Mr. Spock (Star Trek II)
This month, we explore a related and powerful technique to address bias: propensity score weighting (PSW), which applies weights to each subject instead of matching (or discarding) them.
▲ Nature Methods Points of Significance column: Propensity score weighting.
(
read)
Kurz, C.F., Krzywinski, M. & Altman, N. (2025) Points of significance: Propensity score weighting. Nat. Methods 22:1–3.
Thu 13-03-2025
Celebrate π Day (March 14th) and sequence digits like its 1999. Let's call some peaks.
▲ 2025 π DAY | TTCAGT: a sequence of digits. The digits of π are encoded into DNA sequence and visualized with Sanger sequencing.
(
details)
Sun 09-03-2025
I don’t have good luck in the match points. —Rafael Nadal, Spanish tennis player
Points of Significance is an ongoing series of short articles about statistics in Nature Methods that started in 2013. Its aim is to provide clear explanations of essential concepts in statistics for a nonspecialist audience. The articles favor heuristic explanations and make extensive use of simulated examples and graphical explanations, while maintaining mathematical rigor.
Topics range from basic, but often misunderstood, such as uncertainty and P-values, to relatively advanced, but often neglected, such as the error-in-variables problem and the curse of dimensionality. More recent articles have focused on timely topics such as modeling of epidemics, machine learning, and neural networks.
In this article, we discuss the evolution of topics and details behind some of the story arcs, our approach to crafting statistical explanations and narratives, and our use of figures and numerical simulations as props for building understanding.
▲ Crafting 10 Years of Statistics Explanations: Points of Significance.
(
read)
Altman, N. & Krzywinski, M. (2025) Crafting 10 Years of Statistics Explanations: Points of Significance. Annual Review of Statistics and Its Application 12:69–87.
Mon 16-09-2024
I don’t have good luck in the match points. —Rafael Nadal, Spanish tennis player
In many experimental designs, we need to keep in mind the possibility of confounding variables, which may give rise to bias in the estimate of the treatment effect.
▲ Nature Methods Points of Significance column: Propensity score matching.
(
read)
If the control and experimental groups aren't matched (or, roughly, similar enough), this bias can arise.
Sometimes this can be dealt with by randomizing, which on average can balance this effect out. When randomization is not possible, propensity score matching is an excellent strategy to match control and experimental groups.
Kurz, C.F., Krzywinski, M. & Altman, N. (2024) Points of significance: Propensity score matching. Nat. Methods 21:1770–1772.