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course 4.0.2.1

Level: intermediate
4.0.2.1 | intermediate | 1 sessions
Spans and Sets
A lightning presentation on CPAN modules that help you handle spans and sets. This is of interest to those of you who work with objects with spatial coordinates (clones, contigs, alignments, etc) or objects identified by an index set (array probes, ordered features, etc). Focus will be on demonstrating how to use the Set::IntSpan module to calculate coverage and coverage gaps and to find runs in probe sets. Other CPAN modules that implement sets and multisets will be mentioned.
2005-5-4 - 2005-5-4 | 15:00 | Echelon Smith Room | Martin K

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course code

cat.course.level.sessions.session

e.g. 1.0.1.8

categories

0 | introduction and orientation

1 | perl fundamentals

2 | shell and prompt tools

3 | web development

4 | CPAN Modules

5 | Ruby

levels

level: all all ( 0 )

level: beginner beginner ( 1 )

level: intermediate intermediate ( 2 )

level: advanced advanced ( 3 )
[ use while/until and if/unless to draw attention to positive/negative conditions ]
4.0.2.1 Spans and Sets

lecture notes

1 | Spans and Sets | 4.0.2.1.1

Introduction to Set::IntSpan, Set::IntRange, Set::Window and Set::Bag.

4.0.2.1.1.p1 | Spans and Sets | Martin Krzywinski | ppt
4.0.2.1.1.c1 | range | Martin Krzywinski | code
4.0.2.1.1.c2 | spans | Martin Krzywinski | code
4.0.2.1.1.d1 | Spans and Sets | Martin Krzywinski | data
4.0.2.1.1.d2 | Spans and Sets | Martin Krzywinski | data
4.0.2.1.1.d3 | Spans and Sets | Martin Krzywinski | data
4.0.2.1.1.a1 | Spans and Sets | Martin Krzywinski | pdf
4.0.2.1.1.s1 | Spans and Sets | Martin Krzywinski | slides

other in this category

4.1.2.2 | Random Numbers and Distributions

other by same level

1.1.2.8 | Intermediate Perl

1.2.2.1 | Effective use of map, sort and grep in Perl

2.1.2.4 | Data Mining and Analysis at the Command Line

2.2.2.2 | Prompt Tools

4.1.2.2 | Random Numbers and Distributions

other by same instructor

Other courses by Martin Krzywinski.

0.0.0.1 | Orientation Session

0.1.0.1 | Two Problems

1.0.1.8 | Introduction to Perl

1.1.2.8 | Intermediate Perl

1.2.2.1 | Effective use of map, sort and grep in Perl

2.1.2.4 | Data Mining and Analysis at the Command Line

2.2.2.2 | Prompt Tools

4.1.2.2 | Random Numbers and Distributions