high-resolution, whole genome BAC arrays >> rat >> rearray details
| rat BAC array | |
|---|---|
| clones | 27,312 |
| libraries |
CHORI-230 RPCI-31 RPCI-32 |
| resolution | 88 kb |
| redundancy | 2.2 x |
| availability | to be rearrayed |
| contact | Martin Krzywinski |
| details | view | download | |
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Rat BAC Array
Rearray details
The rat rearray is constructed using 27,312 clones from CHORI-230, RPCI-31, RPCI-32 BAC libraries. The set achieves an average depth of coverage of 2.2X, average effective resolution of 88 kb. Genome-adjacent clones in the set overlap by an average of 118 kb. The set provides coverage of 98.7% of the rat rn3 (Jun 2003) genome assembly and 99.3% of the rat Jan 2004 BAC fingerprint map. The clone set is not yet available. For details and timelines please contact Martin Krzywinski. The current version of the set is 0.1.
| BCGSC high resolution rat BAC array | |
|---|---|
| clones | |
| total | 27,312 |
| localized | 28,547 |
| sequenced | 15,989 |
| with pair-end BES | 19,175 |
| size | 204 kb |
| libraries | |
| CHORI-230 | 27,021, 204 kb |
| RPCI-31 | 117, 153 kb |
| RPCI-32 | 174, 175 kb |
| coverage | |
| sequence | 98.7%, 2.66 Gb, rn3 (Jun 2003) |
| fingerprint map | 99.3%, Jan 2004 |
| resolution | |
| resolution | 88 kb |
| depth | 2.2 X |
| clone overlap | 118 kb |
| construction | |
| sequence | rn3 (Jun 2003) |
| fp map | Jan 2004 |
| availability | |
| version | v 0.1 |
| status | to be rearrayed |
| contact | Martin Krzywinski |