Clone Set Summaries
| human BAC array | |
|---|---|
| clones | 32,855 |
| libraries |
RPCI-11 RPCI-13 Caltech-D |
| resolution | 76 kb |
| redundancy | 1.8 x |
| availability | BACPAC Resources |
| contact | Pieter J. de Jong |
| details | view | download | |
| mouse BAC array | |
|---|---|
| clones | 28,103 |
| libraries |
RPCI-23 RPCI-24 |
| resolution | 80 kb |
| redundancy | 2 x |
| availability | to be validated |
| contact | Martin Krzywinski |
| details | view | download | |
| rat BAC array | |
|---|---|
| clones | 27,312 |
| libraries |
CHORI-230 RPCI-31 RPCI-32 |
| resolution | 88 kb |
| redundancy | 2.2 x |
| availability | to be rearrayed |
| contact | Martin Krzywinski |
| details | view | download | |
Publications
Papers
Selection of Clones and Initial Rearray
Krzywinski, M., I. Bosdet, et al. (2004). "A set of BAC clones spanning the human genome." Nucleic Acids Res 32(12): 3651-60.
Experimental Verification
Ishkanian, A. S., C. A. Malloff, et al. (2004). "A tiling resolution DNA microarray with complete coverage of the human genome." Nat Genet 36(3): 299-303.
Applications
Lim, G., J. Karaskova, et al. (2005). "An integrated mBAND and submegabase resolution tiling set (SMRT) CGH array analysis of focal amplification, microdeletions, and ladder structures consistent with breakage-fusion-bridge cycle events in osteosarcoma." Genes Chromosomes Cancer 42(4): 392-403.
Coe, B. P., L. J. Henderson, et al. (2005). "High-resolution chromosome arm 5p array CGH analysis of small cell lung carcinoma cell lines." Genes Chromosomes Cancer 42(3): 308-13.
Garnis, C., B. Coe, et al. (2004). "Construction and optimization of chromosome arm-specific comparative genomic hybridization arrays for identifying genetic alterations in preinvasive lung cancers." Chest 125(5 Suppl): 104S-5S.
Garnis, C., B. P. Coe, et al. (2004). "Overexpression of LRP12, a gene contained within an 8q22 amplicon identified by high-resolution array CGH analysis of oral squamous cell carcinomas." Oncogene 23(14): 2582-6.
de Leeuw, R. J., J. J. Davies, et al. (2004). "Comprehensive whole genome array CGH profiling of mantle cell lymphoma model genomes." Hum Mol Genet 13(17): 1827-37.
Watson, S. K., R. J. deLeeuw, et al. (2004). "Methods for high throughput validation of amplified fragment pools of BAC DNA for constructing high resolution CGH arrays." BMC Genomics 5(1): 6.
Software
Lingjaerde, O. C., L. O. Baumbusch, et al. (2005). "CGH-Explorer: a program for analysis of array-CGH data." Bioinformatics 21(6): 821-822.
Chi, B., R. J. DeLeeuw, et al. (2004). "SeeGH--a software tool for visualization of whole genome array comparative genomic hybridization data." BMC Bioinformatics 5(1): 13.