high-resolution, whole genome BAC arrays >> publications >> papers

Clone Set Summaries

human BAC array
clones 32,855
libraries RPCI-11
resolution 76 kb
redundancy 1.8 x
availability BACPAC Resources
contact Pieter J. de Jong
mouse BAC array
clones 28,103
libraries RPCI-23
resolution 80 kb
redundancy 2 x
availability to be validated
contact Martin Krzywinski
rat BAC array
clones 27,312
libraries CHORI-230
resolution 88 kb
redundancy 2.2 x
availability to be rearrayed
contact Martin Krzywinski



Selection of Clones and Initial Rearray

Krzywinski, M., I. Bosdet, et al. (2004). "A set of BAC clones spanning the human genome." Nucleic Acids Res 32(12): 3651-60.

Experimental Verification

Ishkanian, A. S., C. A. Malloff, et al. (2004). "A tiling resolution DNA microarray with complete coverage of the human genome." Nat Genet 36(3): 299-303.


Lim, G., J. Karaskova, et al. (2005). "An integrated mBAND and submegabase resolution tiling set (SMRT) CGH array analysis of focal amplification, microdeletions, and ladder structures consistent with breakage-fusion-bridge cycle events in osteosarcoma." Genes Chromosomes Cancer 42(4): 392-403.

Coe, B. P., L. J. Henderson, et al. (2005). "High-resolution chromosome arm 5p array CGH analysis of small cell lung carcinoma cell lines." Genes Chromosomes Cancer 42(3): 308-13.

Garnis, C., B. Coe, et al. (2004). "Construction and optimization of chromosome arm-specific comparative genomic hybridization arrays for identifying genetic alterations in preinvasive lung cancers." Chest 125(5 Suppl): 104S-5S.

Garnis, C., B. P. Coe, et al. (2004). "Overexpression of LRP12, a gene contained within an 8q22 amplicon identified by high-resolution array CGH analysis of oral squamous cell carcinomas." Oncogene 23(14): 2582-6.

de Leeuw, R. J., J. J. Davies, et al. (2004). "Comprehensive whole genome array CGH profiling of mantle cell lymphoma model genomes." Hum Mol Genet 13(17): 1827-37.

Watson, S. K., R. J. deLeeuw, et al. (2004). "Methods for high throughput validation of amplified fragment pools of BAC DNA for constructing high resolution CGH arrays." BMC Genomics 5(1): 6.


Lingjaerde, O. C., L. O. Baumbusch, et al. (2005). "CGH-Explorer: a program for analysis of array-CGH data." Bioinformatics 21(6): 821-822.

Chi, B., R. J. DeLeeuw, et al. (2004). "SeeGH--a software tool for visualization of whole genome array comparative genomic hybridization data." BMC Bioinformatics 5(1): 13.