visualize settings samples about

data format requirements

The files you upload must be plain-text tabular data. The file can be space- or tab-delimited. Adjacent spaces will be collapsed, so don't use them to indicate missing fields (instead, use a hyphen — see below). 

# use a space to separate fields
labels A B C
A 10 15 20
D 15 20 25
E 20 30 50

# use a tab to separate fields
labels	A	B	C
A	10	15	20
D	15	20	25
E	20	30	50

Row names are expected to be in the first column and column names in the first row. No two rows may have the same name. No two columns may have the same name.

Each line must have the same number of fields. This limitation requires that any leading cells in the header row are populated. 

# leading header cells (here "labels") must be populated (i.e. this field must exist)
labels	A	B	C
A	10	15	20
D	15	20	25
E	20	30	50

Your table values are required to be non-negative integers. If your data value are floating values in the range [0,1], multiply each table cell by a large value, like 1000. The viewer will truncate any decimal components. Make sure that you have no thousands-separators in your output (1525, not 1,525) and no quotes around numbers (1525, not "1525").

Any lines with leading # are treated as comments and not parsed. Blank lines are also ignored.

Only the first 75 rows and 75 columns of your data will be parsed. If you would like to generate more complex images, download Circos and use the tableviewer tool.

encoding missing data

To encode missing fields (e.g. table cell for which no data is present, use a hyphen "-"). 

# missing data is encoded by -
labels	A	B	C
A	10	-	50
D	15	25	5
E	-	-	30

sample images

The sample images were generated using the default image settings.

sample 1

A simple table. All columns and rows have unique names. 


Download tableVisualize table
# Small tab-delimited table with different row and column labels





data
A
B
C
D




E
105
450
92
96




F
20
46
78
33




G
118
553
94
317




H
100
18
108
104
Circos table viewer result
Figure 1. Visualization of a simple table with columns A,B,C,D and rows E,F,G,H.

sample 2

A table file with the same data as in the previous sample, but now some rows and columns have the same name. Columns and rows with the same name are joined on the same segment. 


Download tableVisualize table
# Small tab-delimited table with mixed row and column labels





data
A
B
C
D




A
105
450
92
96




B
20
46
78
33




G
118
553
94
317




H
100
18
108
104
Circos table viewer result
Figure 2. Visualization of a simple table with columns A,B,C,D and rows A,B,G,H. Because two pairs of row/column share the same label (A,B), the row/column of the pair are joined on the same segment.

sample 3

A table file with the same data as in the previous sample, but now each row has a corresponding column of the same name. Because there are only 4 unique labels (A,B,C,D), the image has four segments. 


Download tableVisualize table
# Small tab-delimited table with same row and column labels





data
A
B
C
D




A
105
450
92
96




B
20
46
78
33




C
118
553
94
317




D
100
18
108
104
Circos table viewer result
Figure 3. Visualization of a simple table with columns A,B,C,D and rows A,B,C,D.

sample 4

A large table with a variety of row and column labels, some shared. 


Download tableVisualize table
# Medium tab-delimited table with mixed row and column labels





data
A
B
C
D
E
F
G




A
105
450
92
96
5
301
195




B
20
46
78
33
53
28
83




C
118
553
94
317
25
89
287




D
100
18
108
104
105
25
173




H
23
83
123
342
98
48
205




I
73
428
103
25
82
5
23




J
105
173
38
49
81
258
207
Circos table viewer result
Figure 4. Visualization of a simple table with labels A..J. Labels E,F,G are unique to columns and H,I,J are unique to rows.

sample 5

Same table as in the sample above, but now the data file includes a row that specifies the order in which the column segments in the figure are arranged.

To parse this file correctly, you must check row with col order. 


Download tableVisualize table
# Medium tab-delimited table with mixed row and column labels.
#
# + column order (first row)
#
# When uploading this file, make sure you check off the fields shown below.
# 
# order	 [ ] col with row order	  [x] row with col order
# size	 [ ] col with row size	  [ ] row with col size
# color	 [ ] col with row colors  [ ] row with col colors









data
1
7
3
4
2
6
5




data
A
B
C
D
E
F
G




A
105
450
92
96
5
301
195




B
20
46
78
33
53
28
83




C
118
553
94
317
25
89
287




D
100
18
108
104
105
25
173




H
23
83
123
342
98
48
205




I
173
428
103
325
82
215
23




J
305
173
138
49
81
258
207
Circos table viewer result
Figure 5. Column segment order is specified by the leading row. Any labels (e.g. uniquely named rows) that do not have an associated order (H,I,J) are placed at the end of the segment sequence.

sample 6

Both rows and column order is specified using a leading column and row.

To parse this file correctly, you must check row with col order and col with row order. 


Download tableVisualize table
# Medium tab-delimited table with mixed row and column labels.
#
# + column order (first row)
# + row order (first column)
#
# When uploading this file, make sure you check off the fields shown below.
# 
# order	 [x] col with row order	  [x] row with col order
# size	 [ ] col with row size	  [ ] row with col size
# color	 [ ] col with row colors  [ ] row with col colors









data
data
1
7
3
4
2
6
5




data
data
A
B
C
D
E
F
G




1
A
105
450
92
96
5
301
195




7
B
20
46
78
33
53
28
83




3
C
118
553
94
317
25
89
287




4
D
100
18
108
104
105
25
173




0
H
23
83
123
342
98
48
205




9
I
173
428
103
325
82
215
23




8
J
305
173
138
49
81
258
207
Circos table viewer result
Figure 6. Order of row and column segments can be adjusted using a leading column or row.

sample 7

The size of the segment is automatically calculated based on the total cell values for a given label. You can override the segment size by including a size column and/or row.

If you set the size to be larger than the cell total for a label, the trailing part of the segment will be unoccupied.

If you set the size to be smaller than the cell total for a label, some cell ribbons will not be displayed.

To parse this file correctly, you must check row with col size and col with row size. 


Download tableVisualize table
# Medium tab-delimited table with mixed row and column labels.
#
# + column size (first row)
# + row size (first column)
#
# When uploading this file, make sure you check off the fields shown below.
# 
# order	 [ ] col with row order	  [ ] row with col order
# size	 [x] col with row size	  [x] row with col size
# color	 [ ] col with row colors  [ ] row with col colors









data
data
3000
2750
2500
2500
750
1250
1500




data
data
A
B
C
D
E
F
G




3000
A
105
450
92
96
5
301
195




2750
B
20
46
78
33
53
28
83




2500
C
118
553
94
317
25
89
287




2500
D
100
18
108
104
105
25
173




1250
H
23
83
123
342
98
48
205




2000
I
173
428
103
325
82
215
23




1500
J
305
173
138
49
81
258
207
Circos table viewer result
Figure 7. Segment size can be controlled with a leading column or row.

sample 8

You can include both segment size and order rows and columns. If both are used, the first leading row/column will determine the order, and the second leading row/column will determine the size.

To parse this file correctly, you must check row with col size, col with row size, row with col order and col with row order. 


Download tableVisualize table
# Medium tab-delimited table with mixed row and column labels.
#
# + column size (first row)
# + column order (second row)
# + row size (first column)
# + row order (second column)
#
# When uploading this file, make sure you check off the fields shown below.
# 
# order	 [x] col with row order	  [x] row with col order
# size	 [x] col with row size	  [x] row with col size
# color	 [ ] col with row colors  [ ] row with col colors









data
data
data
5
2
7
4
1
3
6




data
data
data
3000
2750
2500
2500
750
1250
1500




data
data
data
A
B
C
D
E
F
G




5
3000
A
105
450
92
96
5
301
195




2
2750
B
20
46
78
33
53
28
83




7
2500
C
118
553
94
317
25
89
287




4
2500
D
100
18
108
104
105
25
173




10
1250
H
23
83
123
342
98
48
205




9
2000
I
173
428
103
325
82
215
23




8
1500
J
305
173
138
49
81
258
207
Circos table viewer result
Figure 8. Order of row and column segments can be adjusted using a leading column or row.

sample 9

Normally colors are automatically assigned to segments. You can assign colors to segments by including a row (and/or column) that contains RGB colors for each segment.

If a column and row share a label (e.g. A), then both color definitions (in the color row and column) must be identical (here, 255,136,0 which is orange).

To parse this file correctly, you must check row with color column, col with color row. 


Download tableVisualize table
# Small tab-delimited table with mixed row and column labels.
#
# + column color (first row)
# + row color (first column)
#
# When uploading this file, make sure you check off the fields shown below.
# 
# order	 [ ] col with row order	  [ ] row with col order
# size	 [ ] col with row size	  [ ] row with col size
# color	 [x] col with row colors  [x] row with col colors





data
data
255,136,0
186,255,0
104,152,178
38,82,153




data
data
A
B
C
D




255,136,0
A
10
10
10
10




186,255,0
B
20
20
20
20




200,200,200
E
30
30
40
40




150,150,150
F
50
50
60
60
Circos table viewer result
Figure 9. Color for each row and column can be defined in the table file.

sample 10

Use custom colors to create images in which only ribbons for some columns and/or rows are colored.

Ribbons derive their color from the color of the row segment. Here, rows C1 and C2 have spot colors (C1 is red, C2 is blue) and all other segments are dark grey. Notice that you must specify a color for all segments, even if the same color is repeated.

If a column and row share a label (e.g. A), then both color definitions (in the color row and column) must be identical (here, 255,136,0 which is orange).

To parse this file correctly, you must check row with color column, col with color row. 


Download tableVisualize table
# Large tab-delimited table with mixed row and column labels.
#
# + column color (first row)
# + row color (first column)
#
# When uploading this file, make sure you check off the fields shown below.
# 
# order	 [ ] col with row order	  [ ] row with col order
# size	 [ ] col with row size	  [ ] row with col size
# color	 [x] col with row colors  [x] row with col colors
#
# This data set uses custom colors to draw focus to specific rows and/or columns.
# All rows and columns are dark grey RGB=(50,50,50) except for row C1 (orange) and C2 (blue).





data
data
50,50,50
50,50,50
50,50,50
50,50,50
50,50,50
50,50,50
50,50,50
50,50,50
50,50,50
50,50,50
50,50,50
50,50,50
50,50,50
50,50,50
50,50,50




data
data
A
B
C
D
E
F
G
H
I
J
K
L
M
N
O




50,50,50
A
91
558
96
113
109
125
57
109
115
102
92
89
42
51
45




50,50,50
B
21
1
21
21
18
18
8
25
17
20
16
21
11
8
10




236,28,36
C1
75
652
93
232
290
278
291
332
99
109
101
97
54
50
48




28,145,236
C2
104
22
100
940
120
109
52
958
112
116
92
96
49
50
45




50,50,50
E
97
22
122
86
112
102
47
104
81
898
79
101
55
54
47




50,50,50
F
83
23
103
96
114
483
46
95
97
94
93
92
50
51
52




50,50,50
G
12
2
10
10
8
10
0
8
10
8
9
9
6
5
247




50,50,50
H
96
20
109
102
106
107
48
117
98
88
94
111
44
46
48




50,50,50
I
100
21
98
87
97
95
45
92
119
111
86
106
50
57
49




50,50,50
J
101
18
81
83
777
111
52
115
100
100
109
99
44
48
45




50,50,50
K
96
19
96
97
400
105
43
86
103
112
92
86
52
52
48




50,50,50
L
100
19
122
70
97
90
41
110
94
85
97
98
60
46
47




50,50,50
M
45
9
49
42
280
47
28
50
47
40
49
50
25
22
29




50,50,50
N
81
16
80
1159
78
77
38
773
66
73
64
80
35
41
37




50,50,50
O
8
2
8
9
9
12
312
11
9
9
9
8
4
6
5
Circos table viewer result
Figure 10. Color for each row and column can be defined in the table file. Use this to generate images with spot colors for specific rows and columns. 
Cookie version [NO_VERSION].
Wrong cookie version [NO_VERSION] but needed [0.63-10]. Making new cookie.
access_code 
color_ribbons_by_value 0
contribution_tracks   
encoding 
fade_transparency 0
format        
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label_segment_color vvvdgrey
label_segment_font normal
label_segment_font_size 24
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placement_order row,col
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q3ribbonc inherit
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ribbon_color_source row
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segment_color_order ascii
segment_order ascii
segment_order_progression size_desc
segment_radius 0.75
segment_spacing 0.0075r
segment_thickness 35p
transparency 1
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Baking new cookie.
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